Publications

2025

1. A multistage binomial model with measurement errors: application to protein viability prediction

   Chénangnon Frédéric Tovissodé, Yesol Sapozhnikov, and CR Miller

   Manuscript in preparation, 2025
2. Modeling the Relationship between the Capsid Spike Protein Stability and Fitness in ϕX174 Bacteriophage

   Y. Sapozhnikov, J.T. Van Leuven, J.S. Patel, and 1 more author

   bioRxiv, 2025
3. ΦX174 bacteriophage viability predicted by protein biophysical modeling

   James T. Van Leuven, Jagdish Suresh Patel, Casey Beard, and 10 more authors

   bioRxiv, 2025

2023

1. Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability

   Yesol Sapozhnikov, Jagdish Suresh Patel, F Marty Ytreberg, and 1 more author

   BMC bioinformatics, 2023

2019

1. Saturation mutagenesis genome engineering of infective \varphix174 bacteriophage via unamplified oligo pools and golden gate assembly

   Matthew S Faber, James T Van Leuven, Martina M Ederer, and 5 more authors

   ACS synthetic biology, 2019