Additional Resources

All of Us Workbench

• Support Hub
• All of Us YouTube Channel

Course Supplemental Materials

• Analysis Plan Template
• Researcher’s Guide to Using the Workbench
  • This guide is created by RTI International who partners with the All of Us Research Program in training researchers. Chapter 2 contains information about courses they offer and their “Amaze” platform for learning. But this is not required or expected for our workshop.
  • The information about workbench navigation and tools (Chapters 6-9) are outdated due to the recent roll-out of Workbench 2.0. However, the rest of the guide is still very helpful.

R Programming and Statistics

• R for Health Data Science
  • R tutorials for medical statistics
• R Recipes
  • Quickly find code snippets by tasks
• R Tutorials & Resources
  • Collection of tutorials by University of Idaho Statistical Programs, CALS

Useful R Packages

• broom
  • Useful functions for displaying model components as a neat dataframe
• gtsummary
  • Convenient package to create publication-ready tables to describe data and more
• MatchIt
  • Useful package for creating matched datasets (can do exact matching or propensity score matching)
  • Check out this very approachable tutorial: Introduction to Propensity Score Matching with MatchIt
• survival package is widely used for survival analysis including Kaplan-Meier plots and Cox proportional hazards models. Here are a few tutorial pages you can check out:
  • Survival Analysis in R - Emily C. Zabor
  • Survival Analysis in R - The Miller Lab
  • Introduction to Survival Analysis in R - UCLA